PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0174s0036.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 293aa    MW: 32998.7 Da    PI: 8.867
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0174s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.6e-1820107195
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv      ++s+ l +p  f++ + g+   +   +l+d +gr W+v l  ++ +++ ++++GW++Fv +  L+eg+f++F++d+ ++f
  Kalax.0174s0036.1.p  20 FFKVY--LACFSSHHLKIPPAFVKYCVGN--LPERAVLKDVNGRAWDVGL--DRADDGLFIEDGWEKFVGDAALNEGEFLIFTYDQ-DDF 102
                          56666..67789999********777555..45569**************..********************************98.889 PP

                          ..EEE CS
                   B3  91 elvvk 95 
                          ++vvk
  Kalax.0174s0036.1.p 103 TFVVK 107
                          88886 PP

2B335.51.7e-111932821797
                          E--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3  17 vlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           l+k+ a+++              +++   + t++l+     +W+ k+ ++ k+gr +l++GW +F ++n+Lk+gD + F+++ +   ++
  Kalax.0174s0036.1.p 193 HLSKTMAKSNkyklnldgkllkkhNIQ--MHPTVKLYIGGLSKWTTKF-VTSKDGRLYLGSGWTHFYHENDLKAGDECDFEFVLD--NRM 277
                          555555555544444433333311433..333777777777*******.6888899*************************7632..233 PP

                          EEEEE CS
                   B3  93 vvkvf 97 
                          + +++
  Kalax.0174s0036.1.p 278 RARIC 282
                          44554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-2017114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-1917111IPR015300DNA-binding pseudobarrel domain
CDDcd100175.56E-1618107No hitNo description
PROSITE profilePS5086312.53418112IPR003340B3 DNA binding domain
PfamPF023622.2E-1520107IPR003340B3 DNA binding domain
SMARTSM010196.3E-1320112IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-12191275IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-8193283No hitNo description
Gene3DG3DSA:2.40.330.103.6E-13193282IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.018194285IPR003340B3 DNA binding domain
PfamPF023622.9E-9196282IPR003340B3 DNA binding domain
PROSITE profilePS508639.798233285IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTRQRTRPSH SAAGDVPPEF FKVYLACFSS HHLKIPPAFV KYCVGNLPER AVLKDVNGRA  60
WDVGLDRADD GLFIEDGWEK FVGDAALNEG EFLIFTYDQD DFTFVVKRYG THGCRKDVCL  120
ASNKEIVCAN LGDEEKDAGD HELAVYTDGS GGSIRNLRPL KSRLRISEKK AVAAKGDIAW  180
LEASGRIVSN CLHLSKTMAK SNKYKLNLDG KLLKKHNIQM HPTVKLYIGG LSKWTTKFVT  240
SKDGRLYLGS GWTHFYHEND LKAGDECDFE FVLDNRMRAR ICKQIRVQIR HI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-25B3 family protein